Publications

13 peer-reviewed journal articles, 1 preprint and 4 book chapters. Also available on ORCID and HAL.

Underlined names are people whose work I supervised.

Journal articles

Why structural divergence varies among residues in enzyme evolution: contributions of mutation, stability, and activity constraints Echave J., Carpentier M. Molecular Biology and Evolution, 2026 DOI Preprint

On the variation of structural divergence among residues in enzyme evolution Echave J., Carpentier M. Proteins: Structure, Function, and Bioinformatics, 2026 DOI Preprint

Origins and functional significance of eukaryotic protein folds Romei M., Carpentier M., Sapriel G., Chomilier J., Lecointre G. Journal of Molecular Evolution, 2023 DOI

Protein folds as synapomorphies of the tree of life Romei M., Sapriel G., Imbert P., Chomilier J., Lecointre G., Carpentier M. Evolution, 2022 DOI

Analyses of displacements resulting from a point mutation in proteins Carpentier M., Chomilier J. Journal of Structural Biology, 2020 DOI

Protein multiple alignments: sequence-based versus structure-based programs Carpentier M., Chomilier J. Bioinformatics, 2019 DOI Preprint

Identification of a novel elastin-degrading enzyme from the fish pathogen Flavobacterium psychrophilum Rochat T., Pérez-Pascual D., Nilsen H., Carpentier M., Bridel S., Bernardet J.-F., Duchaud E. Applied and Environmental Microbiology, 2019 DOI

Structural effects of point mutations in proteins Shanthirabalan S., Chomilier J., Carpentier M. Proteins: Structure, Function, and Bioinformatics, 2018 DOI

Contribution to the prediction of the fold code: application to immunoglobulin and flavodoxin cases Banach M., Prudhomme N., Carpentier M., Duprat E., Papandreou N., Kalinowska B., Chomilier J., Roterman I. PLOS ONE, 2015 DOI

Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937 Glasner J.D., Yang C.-H., Reverchon S., et al. (incl. Carpentier M.), Perna N.T. Journal of Bacteriology, 2011 DOI

A relational extension of the notion of motifs: application to the common 3D protein substructures searching problem Pisanti N., Soldano H., Carpentier M., Pothier J. Journal of Computational Biology, 2009 DOI

YAKUSA: a fast structural database scanning method Carpentier M., Brouillet S., Pothier J. Proteins: Structure, Function, and Bioinformatics, 2005 DOI

RPBS: a web resource for structural bioinformatics Alland C., Moreews F., Boens D., Carpentier M., et al., Tufféry P. Nucleic Acids Research (Web Server Issue), 2005 DOI

Incremental inference of relational motifs with a degenerate alphabet Pisanti N., Soldano H., Carpentier M. Lecture Notes in Computer Science 3537 (Proceedings of CPM, Combinatorial Pattern Matching), Springer, 2005 DOI

Book chapters

Analyses of mutation displacements from homology models Carpentier M., Chomilier J. In: Filipek S. (ed.), Homology Modeling: Methods and Protocols. Methods in Molecular Biology, Springer US, 2023 DOI

Impact of a point mutation in a protein structure Carpentier M., Chomilier J. In: Maurel M.-C. & Grandcolas P. (eds), Systematics and the Exploration of Life. ISTE / Wiley, 2021 DOI

Protein pairwise structural alignment methods: a review Carpentier M., Pothier J. In: de Brevern A.G. (ed.), Recent Advances in Structural Biology. Research Signpost, 2007

Implicit and explicit representation of approximated motifs Pisanti N., Soldano H., Carpentier M., Pothier J. In: Iliopoulos C., Park K. & Steinhöfel K. (eds), Algorithms for Bioinformatics. King’s College London Press, 2006

Habilitation

Protein structure and evolution Carpentier M. Habilitation à diriger des recherches, Sorbonne Université, 2023 HAL